I noticed that in the Funnelback/admin/reports/ directory there are multiple dll files created - one for each time the analytics job is updated.
Are you only seeing these .dll files during the time the analytics job is updating?
Is it a support interface to query the sqlite db directly rather than going through the REST API?
This is not an officially-supported method, no. Only the APIs and the Marketing Dashboard UI are regarded as 'official', providing a separation between the interfaces and the underlying analytics datastore.