Thanks @gordongrace for the info.
This is what I've added to the collection.cfg file:
filter.classes=CombinerFilterProvider,TikaFilterProvider,ExternalFilterProvider:JSoupProcessingFilterProvider:DocumentFixerFilterProvider
filter.noindex.1=.* script,form
filter.noindex.2=div.UFIComment
And I've updated the collection but still am having problems with comments being included within the search.
Is there anything I've missed or do you have any documentation specific to Facebook collections?